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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4731066_4732040_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4731066 - 4732040
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
RLAVVKFTMRGCGPCLRIAP
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
TXNL1
Ensembl Gene ID:
ENSAPLG00000015099
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029352
4730815 - 4743508
12694
ENSAPLT00000027896
4730815 - 4745435
14621
ENSAPLT00000041229
4730815 - 4739533
8719
ENSAPLT00000017198
4730815 - 4745435
14621
ENSAPLT00000031886
4730815 - 4738393
7579
ENSAPLT00000031863
4730815 - 4744836
14022