About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4732138_4733124_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4732138 - 4733124
Intron Length:
987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
TTATGCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AACACTTTAACT
Flanking Amino Acid:
FLEVDVHQCQGTAATNNISA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83
36.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
72.3
0.5
0.9
63.6
42.6
Minor 5ss
36.6
-1.5
3.1
51.4
45.2
Minor BPS
69.5
0.69
1.3
76.33
40.1

Associated Gene:

Gene:
TXNL1
Ensembl Gene ID:
ENSAPLG00000015099
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029352
4730815 - 4743508
12694
ENSAPLT00000027896
4730815 - 4745435
14621
ENSAPLT00000041229
4730815 - 4739533
8719
ENSAPLT00000017198
4730815 - 4745435
14621
ENSAPLT00000031886
4730815 - 4738393
7579
ENSAPLT00000015775
4730815 - 4745435
14621
ENSAPLT00000031863
4730815 - 4744836
14022