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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4733299_4736092_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4733299 - 4736092
Intron Length:
2794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATGCATC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CGCTCAGTAATG
Flanking Amino Acid:
NEDTDIPKGYMDLMPFINKA
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
70.9
39.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
58.7
0.29
2.4
73.8
35.6
Minor BPS
44.3
-0.5
2.3
48.64
45.3

Associated Gene:

Gene:
TXNL1
Ensembl Gene ID:
ENSAPLG00000015099
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027896
4730815 - 4745435
14621
ENSAPLT00000041229
4730815 - 4739533
8719
ENSAPLT00000017198
4730815 - 4745435
14621
ENSAPLT00000031886
4730815 - 4738393
7579
ENSAPLT00000015775
4730815 - 4745435
14621
ENSAPLT00000031863
4730815 - 4744836
14022
ENSAPLT00000029352
4730815 - 4743508
12694