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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4736216_4736582_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4736216 - 4736582
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
TTCTCCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CAGTATTTAACA
Flanking Amino Acid:
TYLESDCDEQLLITVAFSQP
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
81.3
0.71
0.7
76.1
26
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
61.4
0.35
1.5
65.17
41.3

Associated Gene:

Gene:
TXNL1
Ensembl Gene ID:
ENSAPLG00000015099
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027896
4730815 - 4745435
14621
ENSAPLT00000041229
4730815 - 4739533
8719
ENSAPLT00000017198
4730815 - 4745435
14621
ENSAPLT00000031886
4730815 - 4738393
7579
ENSAPLT00000015775
4730815 - 4745435
14621
ENSAPLT00000031863
4730815 - 4744836
14022
ENSAPLT00000029352
4730815 - 4743508
12694