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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4736653_4737184_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4736653 - 4737184
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTTAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
CATATCTTAACA
Flanking Amino Acid:
YSMKLQGPDNGQGPKYIKIF
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
28.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
71.6
0.49
1
66.2
38.3
Minor 5ss
26.7
-2.7
3
27.8
37.9
Minor BPS
70.8
0.65
1.3
72.94
38.7

Associated Gene:

Gene:
TXNL1
Ensembl Gene ID:
ENSAPLG00000015099
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027896
4730815 - 4745435
14621
ENSAPLT00000041229
4730815 - 4739533
8719
ENSAPLT00000017198
4730815 - 4745435
14621
ENSAPLT00000031886
4730815 - 4738393
7579
ENSAPLT00000015775
4730815 - 4745435
14621
ENSAPLT00000031863
4730815 - 4744836
14022
ENSAPLT00000029352
4730815 - 4743508
12694