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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4738631_4745249_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4738631 - 4745249
Intron Length:
6619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTCTT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTCTCTTATCA
Flanking Amino Acid:
QATNMNDFKRVVGKKGESH*
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
71.6
40.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.5
0.8
0.8
85.8
27.1
Minor 5ss
36
-1.6
3.1
46.8
42.6
Minor BPS
69.6
0.61
1.6
80.51
35.1

Associated Gene:

Gene:
TXNL1
Ensembl Gene ID:
ENSAPLG00000015099
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015775
4730815 - 4745435
14621