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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47452802_47452957_F

Intron Information:

Intron Rank:
143120
Intron Class:
major
Intron Phase:
Intron Coordinates:
47452802 - 47452957
Intron Length:
156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AAGGCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.2
0.52
1.1
71.5
43.2
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
54.6
0.22
1.7
67.22
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027102
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045005
47447725 - 47453076
5352