Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47494415_47495878_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47494415 - 47495878

Intron Length:

1464

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATTTG

5'SS Class:

strong_major

3'SS Sequence:

TCTACCAATCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TTTCTACCAATC

Flanking Amino Acid:

EYVKQTWNLQGHALEQAIIS

Intron Amino Acid Position:

139

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

81.2

33.8

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

64.9

0.34

0.9

56.2

38.9

Minor 5ss

43.2

-0.7

2.9

57.8

46.8

Minor BPS

44.6

-0.4

62.02

Associated Gene:

Gene:

SYK

Ensembl Gene ID:

ENSAPLG00000003590

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039802

47469844 - 47525233

55390

ENSAPLT00000003746

47469844 - 47525435

55592