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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47509774_47518221_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47509774 - 47518221
Intron Length:
8448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTGCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATTGCTAAACT
Flanking Amino Acid:
TRPLPGTPSKLQPPIGSPSD
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
80
0.75
1
78.6
31
Major PPT
71.9
0.49
1
64.6
41.5
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
63.8
0.51
2.1
85.03
41.4

Associated Gene:

Gene:
SYK
Ensembl Gene ID:
ENSAPLG00000003590
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039802
47469844 - 47525233
55390