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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47519158_47520453_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47519158 - 47520453
Intron Length:
1296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCAACT
Flanking Amino Acid:
TVKKGFYKMKKGAKPVAVKI
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
100
1.24
0.5
100
0
Major PPT
88
0.85
0.6
84.7
23
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
73.2
0.81
1.8
94.07
33

Associated Gene:

Gene:
SYK
Ensembl Gene ID:
ENSAPLG00000003590
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039802
47469844 - 47525233
55390
ENSAPLT00000003746
47469844 - 47525435
55592