About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47531344_47531959_R

Intron Information:

Intron Rank:
145059
Intron Class:
major
Intron Phase:
Intron Coordinates:
47531344 - 47531959
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
TACTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
70.8
35.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.6
0.73
0.8
76.3
32
Minor 5ss
40.3
-1.1
3
60.6
43.7
Minor BPS
47.4
-0.2
2.3
70.94
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025441
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045871
47527072 - 47532082
5011