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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47534889_47535704_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47534889 - 47535704
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCCT
U12 Branch Point Sequence:
CTTTTCTCCACA
Flanking Amino Acid:
STTASTAASYSSKMSGVEDA
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
37.5
-0.7
4.3
79.6
35.6
Major PPT
84.9
0.79
0.7
80.1
25.5
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
54.4
0.13
2
70.77
41.8

Associated Gene:

Gene:
TPPP2
Ensembl Gene ID:
ENSAPLG00000003515
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003580
47533978 - 47535920
1943