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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47627956_47628617_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47627956 - 47628617
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTACCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TTTGTATCAATA
Flanking Amino Acid:
LAIEEACYAQTIPTKDRIEG
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
83.1
28.6
Major BPS
67.7
0.44
1
58
38.9
Major PPT
82.6
0.73
0.8
77
31.3
Minor 5ss
42.1
-0.9
2.5
53.5
43.9
Minor BPS
50.2
0
1.9
68.17
38.6

Associated Gene:

Gene:
AUH
Ensembl Gene ID:
ENSAPLG00000003415
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003481
47627489 - 47736006
108518