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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47628666_47630432_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47628666 - 47630432
Intron Length:
1767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGCTTTTTAAAA
Flanking Amino Acid:
AKLAINQGMEVDLVTGLAIE
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.4
0.93
0.6
91.5
19.8
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
64.2
0.44
1.4
68.55
37.9

Associated Gene:

Gene:
AUH
Ensembl Gene ID:
ENSAPLG00000003415
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003481
47627489 - 47736006
108518