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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47630484_47632226_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47630484 - 47632226
Intron Length:
1743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAACTA
5'SS Class:
major
3'SS Sequence:
TCTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
LALAREFLPQGPVAMRVAKL
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
66.7
38.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
87.7
0.85
0.7
85.6
27.4
Minor 5ss
41
-1
3.2
56.3
47.8
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
AUH
Ensembl Gene ID:
ENSAPLG00000003415
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003481
47627489 - 47736006
108518