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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47632415_47684367_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47632415 - 47684367
Intron Length:
51953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCAAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTTTCCAAATT
Flanking Amino Acid:
ETKLAIIPGAGGTQRLPRTI
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
70.7
0.47
0.9
67.3
37.7
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
59.2
0.37
2
83.92
37.4

Associated Gene:

Gene:
AUH
Ensembl Gene ID:
ENSAPLG00000003415
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003481
47627489 - 47736006
108518