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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47679609_47684367_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47679609 - 47684367
Intron Length:
4759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAAAAATTAATT
Flanking Amino Acid:
ETKLAIIPGAGRKRE*
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76.5
0.6
0.9
72
37.7
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
51.1
0.11
1.8
69.76
40.3

Associated Gene:

Gene:
AUH
Ensembl Gene ID:
ENSAPLG00000003415
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035351
47678846 - 47736006
57161