Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47685009_47704568_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

47685009 - 47704568

Intron Length:

19560

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAC

U12 Branch Point Sequence:

ATAGGCTTAAGT

Flanking Amino Acid:

SKARATINEMANLPVPTIAA

Intron Amino Acid Position:

158

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

75.9

35.2

Major BPS

0.6

65.6

41.1

Major PPT

93.7

0.98

0.6

88.2

29.1

Minor 5ss

40.7

-1

2.5

42.1

44.8

Minor BPS

0.08

2.2

70.84

45.9

Associated Gene:

Gene:

AUH

Ensembl Gene ID:

ENSAPLG00000003415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035351

47678846 - 47736006

57161

ENSAPLT00000003481

47627489 - 47736006

108518