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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47812656_47840756_R

Intron Information:

Intron Rank:
148489
Intron Class:
major
Intron Phase:
Intron Coordinates:
47812656 - 47840756
Intron Length:
28101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
GGTTTTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.8
0.83
0.7
85.8
28.4
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
47.1
-0.1
1.8
65.45
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027281
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027164
47812161 - 47841599
29439