Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47840200_47840756_R

Intron Information:

Intron Rank:

148491

Intron Class:

major

Intron Phase:

Intron Coordinates:

47840200 - 47840756

Intron Length:

557

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

CCATTTTTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

CCATTTTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.8

85.7

25.5

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

76.4

0.59

0.9

72.6

36.2

Minor 5ss

40.8

-1

43.6

Minor BPS

67.3

0.54

1.3

66.93

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027281

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047224

47839861 - 47855919

16059