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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47863735_47865428_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47863735 - 47865428
Intron Length:
1694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTT
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGATTT
Flanking Amino Acid:
EMPLINQHKQAKLKEINLST
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.3
38.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
46.3
-0.4
2.8
67.8
43.1
Minor BPS
57.9
0.32
1.9
82.09
39.3

Associated Gene:

Gene:
ROR2
Ensembl Gene ID:
ENSAPLG00000028633
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048363
47861376 - 47915750
54375
ENSAPLT00000046113
47861376 - 48010664
149289
ENSAPLT00000038063
47861376 - 48010664
149289
ENSAPLT00000027750
47861376 - 47908962
47587