About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47865632_47869199_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47865632 - 47869199
Intron Length:
3568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATAAACG
Flanking Amino Acid:
IGIPVERLSRCPRDNSKMGI
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
69.6
0.44
1.1
64.5
41.5
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
52.9
-0
2
64.99
42.7

Associated Gene:

Gene:
ROR2
Ensembl Gene ID:
ENSAPLG00000028633
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046113
47861376 - 48010664
149289