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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47867433_47869199_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47867433 - 47869199
Intron Length:
1767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTATTTGTAACT
Flanking Amino Acid:
IGIPVERLSRYHQCYNGSGA
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.1
0.66
0.8
75.7
31.4
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
63.3
0.49
2
83.9
37.2

Associated Gene:

Gene:
ROR2
Ensembl Gene ID:
ENSAPLG00000028633
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048363
47861376 - 47915750
54375
ENSAPLT00000038063
47861376 - 48010664
149289
ENSAPLT00000027750
47861376 - 47908962
47587