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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47873518_47893489_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47873518 - 47893489
Intron Length:
19972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTGTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TAGACGTTGACT
Flanking Amino Acid:
GPTNSPNHNLQEDYHEDGFC
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
72
0.55
1
71.8
31.4
Major PPT
85.1
0.79
0.8
80.2
31.8
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
53.2
0.18
2.2
72.8
44.1

Associated Gene:

Gene:
ROR2
Ensembl Gene ID:
ENSAPLG00000028633
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046113
47861376 - 48010664
149289
ENSAPLT00000038063
47861376 - 48010664
149289
ENSAPLT00000027750
47861376 - 47908962
47587
ENSAPLT00000048363
47861376 - 47915750
54375