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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47893521_47894663_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47893521 - 47894663
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATGT
Flanking Amino Acid:
TATGVLFVRLGPTNSPNHNL
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.2
0.81
0.8
80.7
36.7
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
50.6
0.1
2
74.38
43.4

Associated Gene:

Gene:
ROR2
Ensembl Gene ID:
ENSAPLG00000028633
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046113
47861376 - 48010664
149289
ENSAPLT00000038063
47861376 - 48010664
149289
ENSAPLT00000027750
47861376 - 47908962
47587
ENSAPLT00000048363
47861376 - 47915750
54375