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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47894952_47904448_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47894952 - 47904448
Intron Length:
9497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
CTTACCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTTTTCTGACCT
Flanking Amino Acid:
GLERPIPTPKGYFLTFLEPV
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
80
0.68
0.8
72.7
32
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
60.7
0.41
1.8
80.07
42.1

Associated Gene:

Gene:
ROR2
Ensembl Gene ID:
ENSAPLG00000028633
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046113
47861376 - 48010664
149289
ENSAPLT00000038063
47861376 - 48010664
149289
ENSAPLT00000027750
47861376 - 47908962
47587
ENSAPLT00000048363
47861376 - 47915750
54375