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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47904527_48009841_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47904527 - 48009841
Intron Length:
105315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCAGTTTAAACA
Flanking Amino Acid:
AAAILRLRAAGEMEIPDSND
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.7
0.69
0.8
74.1
36
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
49.3
-0
1.7
58.59
41.9

Associated Gene:

Gene:
ROR2
Ensembl Gene ID:
ENSAPLG00000028633
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046113
47861376 - 48010664
149289
ENSAPLT00000038063
47861376 - 48010664
149289