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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48012656_48013031_F

Intron Information:

Intron Rank:
136100
Intron Class:
major
Intron Phase:
Intron Coordinates:
48012656 - 48013031
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCACATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTTCATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.7
0.67
0.9
73.4
35.9
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
49.6
0.05
1.9
69.36
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023332
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017829
48012146 - 48014722
2577