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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48012656_48014111_F

Intron Information:

Intron Rank:
136102
Intron Class:
major
Intron Phase:
Intron Coordinates:
48012656 - 48014111
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023332
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027433
48012146 - 48014722
2577