Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48034164_48034650_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48034164 - 48034650

Intron Length:

487

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTTTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTAAA

U12 Branch Point Sequence:

GTTTTGGTATTC

Flanking Amino Acid:

EKEEKCLPSPSIRVVITVEQ

Intron Amino Acid Position:

446

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

1.1

79.2

36.3

Major BPS

64.8

0.37

1.2

67.9

36.3

Major PPT

89.9

0.9

0.6

84.5

30.4

Minor 5ss

31.5

-2.1

2.4

34.9

40.7

Minor BPS

40.8

-0.7

2.6

57.83

41.9

Associated Gene:

Gene:

SPTLC1

Ensembl Gene ID:

ENSAPLG00000005976

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006230

48033650 - 48066558

32909