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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48035729_48040141_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48035729 - 48040141
Intron Length:
4413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGTGCATTAAAG
Flanking Amino Acid:
KCEHMHKALQGIFGLKVVGE
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
80.5
0.69
0.8
79
34
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
53.9
-0
1.9
62.96
44.2

Associated Gene:

Gene:
SPTLC1
Ensembl Gene ID:
ENSAPLG00000005976
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006230
48033650 - 48066558
32909