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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48041962_48042749_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48041962 - 48042749
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTTCTCTTAATA
Flanking Amino Acid:
RGITEHFGINIDDIDLISAN
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
77
33.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.2
0.7
0.9
74.5
39.4
Minor 5ss
36.4
-1.5
3.2
49.6
39.8
Minor BPS
73
0.72
1.2
76.1
35.4

Associated Gene:

Gene:
SPTLC1
Ensembl Gene ID:
ENSAPLG00000005976
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006230
48033650 - 48066558
32909