About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48042858_48045386_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48042858 - 48045386
Intron Length:
2529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TGCACTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATAT
Flanking Amino Acid:
TGDVCPLPELIKLKYKYKVR
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.7
38.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.6
0.42
1
65.4
40.9
Minor 5ss
37.9
-1.4
2.7
47.5
36
Minor BPS
56.4
0.28
1.7
77.34
39.2

Associated Gene:

Gene:
SPTLC1
Ensembl Gene ID:
ENSAPLG00000005976
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006230
48033650 - 48066558
32909