Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48047146_48048798_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48047146 - 48048798

Intron Length:

1653

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

GCTGTATTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTAAA

U12 Branch Point Sequence:

CTTGCTGTATTT

Flanking Amino Acid:

AYSKRGDIVFVDEAACFAIQ

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

1.1

77.4

37.4

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

76.4

0.59

68.7

41.2

Minor 5ss

40.4

-1.1

2.8

53.8

42.8

Minor BPS

45.4

-0.2

2.3

66.47

45.5

Associated Gene:

Gene:

SPTLC1

Ensembl Gene ID:

ENSAPLG00000005976

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006230

48033650 - 48066558

32909