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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48055964_48056847_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48055964 - 48056847
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATGTCTCTAATT
Flanking Amino Acid:
HPALNYNVVSGPPTHKITVN
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78
38.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.3
0.75
0.8
81.3
35.4
Minor 5ss
37.4
-1.4
3
42
44.5
Minor BPS
63.7
0.51
1.6
78.79
37.8

Associated Gene:

Gene:
SPTLC1
Ensembl Gene ID:
ENSAPLG00000005976
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006230
48033650 - 48066558
32909