Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48159997_48191439_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

48159997 - 48191439

Intron Length:

31443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCAAT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTCTTTTTGATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

77.9

38.6

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

86.3

0.82

0.8

83.9

31.1

Minor 5ss

39.7

-1.2

3.2

56.4

Minor BPS

67.6

0.55

1.1

72.72

33.6

Associated Gene:

Gene:

CDC42SE2

Ensembl Gene ID:

ENSAPLG00000026244

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028329

48128838 - 48194060

65223