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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48233900_48241131_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48233900 - 48241131
Intron Length:
7232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
QAVHTDSDKILLIPRKDLLQ
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
85.1
25.6
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
34.4
-1.8
2.9
46.9
41.8
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
LYRM7
Ensembl Gene ID:
ENSAPLG00000005890
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006094
48233576 - 48246935
13360