About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48241214_48243637_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
48241214 - 48243637
Intron Length:
2424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTCATT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTTTACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCCTTTACT
Flanking Amino Acid:
NETSEEKINELLKIASDVEV
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
76.3
38.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.2
0.66
0.8
74.4
35
Minor 5ss
55.2
0.18
2.5
75.2
40.7
Minor BPS
86.3
1.23
1.4
100.6
26.7

Associated Gene:

Gene:
LYRM7
Ensembl Gene ID:
ENSAPLG00000005890
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006094
48233576 - 48246935
13360