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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48250100_48251970_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48250100 - 48251970
Intron Length:
1871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCGCTC
5'SS Class:
major
3'SS Sequence:
GTTCTTCCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTCACCT
Flanking Amino Acid:
PANIIYEDEQCLAFHDISPQ
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.2
55
44.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.4
0.64
0.8
70.5
36.3
Minor 5ss
34.3
-1.8
3.6
50.1
46.4
Minor BPS
54.8
0.23
1.8
76.21
40.7

Associated Gene:

Gene:
HINT1
Ensembl Gene ID:
ENSAPLG00000006365
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006590
48249936 - 48253193
3258