Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48346631_48347221_R

Intron Information:

Intron Rank:

137602

Intron Class:

major

Intron Phase:

Intron Coordinates:

48346631 - 48347221

Intron Length:

591

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTAATTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTGTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.8

79.2

28.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.1

0.83

0.8

35.3

Minor 5ss

29.1

-2.4

3.2

36.8

41.9

Minor BPS

74.3

0.84

1.2

86.64

33.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021526

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031549

48346531 - 48348916

2386

ENSAPLT00000044667

48345748 - 48348916

3169