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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48394084_48415712_F

Intron Information:

Intron Rank:
138693
Intron Class:
major
Intron Phase:
Intron Coordinates:
48394084 - 48415712
Intron Length:
21629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCTCTCTCACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
72.5
37.3
Major BPS
72.7
0.56
1
75
30.1
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
33.3
-1.9
3.1
43.9
43.5
Minor BPS
45
-0.4
1.8
50.84
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024677
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028463
48393651 - 48416730
23080