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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48430693_48435651_F

Intron Information:

Intron Rank:
150994
Intron Class:
major
Intron Phase:
Intron Coordinates:
48430693 - 48435651
Intron Length:
4959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGAATT
5'SS Class:
major
3'SS Sequence:
TCCTTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
AAGTCTTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
82.7
29.2
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
80.7
0.69
0.7
73.3
31.7
Minor 5ss
36.4
-1.5
3.3
54.1
43
Minor BPS
49.4
-0.1
1.7
52.69
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031121
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040759
48430583 - 48437741
7159