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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48435430_48435651_F

Intron Information:

Intron Rank:
150997
Intron Class:
major
Intron Phase:
Intron Coordinates:
48435430 - 48435651
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACCTA
5'SS Class:
major
3'SS Sequence:
TCCTTCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
AAGTCTTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
67.4
39.7
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
80.7
0.69
0.7
73.3
31.7
Minor 5ss
35.4
-1.7
3.2
47
48.3
Minor BPS
49.4
-0.1
1.7
52.69
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031121
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041204
48434854 - 48437741
2888