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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48501758_48506760_F

Intron Information:

Intron Rank:
148543
Intron Class:
major
Intron Phase:
Intron Coordinates:
48501758 - 48506760
Intron Length:
5003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
79.7
0.67
0.9
75
38.9
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
91
1.27
0.8
94.02
21.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029968
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028125
48501509 - 48512816
11308