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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4871347_4888866_R

Intron Information:

Intron Rank:
148879
Intron Class:
major
Intron Phase:
Intron Coordinates:
4871347 - 4888866
Intron Length:
17520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATTAAAGAGAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
88.4
0.86
0.7
84.9
29.9
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
37.5
-0.8
2.1
59.7
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027561
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029759
4871341 - 4901766
30426