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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48863356_48867445_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48863356 - 48867445
Intron Length:
4090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTTCACA
Flanking Amino Acid:
NVNTITSPRLAALTFKCLGD
Intron Amino Acid Position:
1096

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
88
0.86
0.7
83.8
30.9
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
64.2
0.44
1.7
75.62
35.9

Associated Gene:

Gene:
ADAMTS19
Ensembl Gene ID:
ENSAPLG00000004624
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004766
48863204 - 49057200
193997