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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48888748_48891121_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48888748 - 48891121
Intron Length:
2374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
TATTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TATTTCTTTATA
Flanking Amino Acid:
RKCNEQPCQTRWMMTEWTPC
Intron Amino Acid Position:
917

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
85.6
0.8
0.7
80.9
30.8
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
67.1
0.53
1.5
75.8
35.8

Associated Gene:

Gene:
ADAMTS19
Ensembl Gene ID:
ENSAPLG00000004624
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004766
48863204 - 49057200
193997