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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4889053_4901024_R

Intron Information:

Intron Rank:
148877
Intron Class:
major
Intron Phase:
Intron Coordinates:
4889053 - 4901024
Intron Length:
11972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TCTCCATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
79.3
0.66
0.9
80
32
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
54.4
0.22
1.9
74.56
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027561
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045958
4888540 - 4901766
13227
ENSAPLT00000029759
4871341 - 4901766
30426
ENSAPLT00000023775
4849659 - 4901766
52108