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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48907214_48912590_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48907214 - 48912590
Intron Length:
5377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTACTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCATCAATT
Flanking Amino Acid:
VHQWQAVIDDEKPCALFCSP
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.4
0.55
0.9
66.7
38.8
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
61.6
0.44
1.8
83.48
37

Associated Gene:

Gene:
ADAMTS19
Ensembl Gene ID:
ENSAPLG00000004624
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004766
48863204 - 49057200
193997