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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_48912761_48914376_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48912761 - 48914376
Intron Length:
1616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAAAATA
5'SS Class:
major
3'SS Sequence:
CCATCTTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGATATTTATGC
Flanking Amino Acid:
GISSRQRKCPGLGIEGECHG
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
74.1
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.3
0.61
0.8
72.6
31.8
Minor 5ss
36
-1.6
3.1
40.7
45.3
Minor BPS
45.9
-0.3
2
56.76
41.7

Associated Gene:

Gene:
ADAMTS19
Ensembl Gene ID:
ENSAPLG00000004624
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004766
48863204 - 49057200
193997